PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g13760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 249aa    MW: 27695.7 Da    PI: 8.3633
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g13760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA27.88.4e-09123139319
   CBFB_NFYA   3 plYVNaKQyqrIlkRRq 19 
                 p+YVNaKQy++IlkRRq
  CA05g13760 123 PIYVNAKQYSAILKRRQ 139
                 9***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511529.074120139IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-5123139IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
KSSDQLEHAP SKKTGVESVL KHHSDIKKSE SKFQDQDSTS TLSTGQSNHM EAAMGKSESA  60
TNTLPWPQVH HDHPTACLSY PWDDTYFGRL IATYGSKAII YPQIVGVTST RVALPLECTE  120
SLPIYVNAKQ YSAILKRRQV ARYLVTWFST QRVVVGRLLT NLVLMRQASS MAMTCSSSQS  180
LESLASLFTW VLPCRKLKTS CMLEPDSTLV LSIVVVPTQA ALQMHSYWCT QMDNQQFILG  240
YVTLPFPD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8654091e-158KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654101e-158KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqYP_009049690.11e-85hypothetical protein (mitochondrion)
TrEMBLA0A075VW311e-85A0A075VW31_CAPAN; Uncharacterized protein
STRINGSolyc08g062210.2.13e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.48e-14nuclear factor Y, subunit A1